- Replaced static diagram with a mermaid flowchart for better visualization of secrets management.
- Expanded section on `secrets run` to clarify its operation as a pull → run → clear pipeline.
- Added examples and syntax details for using `secrets run` in various scenarios.
- Included information on automatic clearing of plaintext files after command execution.
- Enhanced error handling for invalid secret file formats and missing configurations.
- Introduced logging functionality to track command execution and errors.
- Updated tests to ensure robust coverage of new error scenarios and logging outputs.
- Revised documentation to include details on error messages and logging usage.
- Changed code block syntax from generic to specific types (`diagram` and `shell`) for better readability.
- Enhanced the presentation of secrets storage and organization examples.
- Updated file tracking to include `.dev.vars` alongside `.env` and `.env.*`.
- Improved pre-commit hook to block plaintext secret files, including `.dev.vars`.
- Added `clear` command to remove plaintext secret files from the current directory and workspaces.
- Enhanced tests to cover new functionality for `.dev.vars` and the `clear` command.
- Updated documentation to reflect changes in tracked files and command usage.
- Introduced `--workspaces` flag for `push` and `pull` commands to handle environment files in monorepos.
- Updated README and CLAUDE.md to reflect new workspace functionality and installation instructions.
- Enhanced test suite with cases for workspace operations, ensuring proper encryption and decryption of environment files.
- Improved error handling for missing package.json and workspaces field.
- Increased test coverage from 20 to 25 tests.
